I realise this is probably a long shot given the amount of discussion around this issue, but I wonder if anyone has found a workaround to get Qgis to delete shapefile elements properly (see bug 11007) that does not involve saving the shapefile as a new layer. I have over 20 virtual fields attached to the layer in question and so 'save as' would cause me to have to re-write them all each time I edit.
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