Merging ShapeFiles with QGIS for UK counties

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I want to draw a map for all the counties of the UK including Northern Ireland. Since I cannot find a source of counties including both Northern Ireland and Britain, I tried to merge two shapefiles with QGIS from different sources (Northern Ireland and Britain) by myself.

On QGIS, it looks good when I look at the map with two different layers.



But when I try to merge the two shapefiles, Northern Ireland overlays Britain as shown below.



Is there anything I can do to get my ideal result like the first image?



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